PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004326G0140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SRS
Protein Properties Length: 257aa    MW: 26250.7 Da    PI: 7.449
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004326G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.14e-67101862154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsals 87 
                      +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + + s +++ ++        +++ask++r    ++q+++s
  PH01004326G0140  10 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAVSGSVSSSPATactaaaaaSASASKKPR--LLSSQTTTS 101
                      57889**********************************************99877655443333335677644444455555..56999999* PP

           DUF702  88 stklssaeskkeletss..................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +t++s+a+++++++t+s                  lP++v+++avf+cvrv+s+ dge+e+aYq+ v+i+GhvfkG+LydqG+++
  PH01004326G0140 102 HTSTSNATTPRSFDTTSshqgnadddildasfresLPRHVRAPAVFKCVRVTSIADGEDEYAYQAMVTINGHVFKGFLYDQGVDD 186
                      **************9999****************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-6213185IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.9E-271557IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.1E-27137184IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLDSGGGSSG SGATTCQDCG NQAKKDCGHN RCRTCCKSRG FDCSTHVKST WVPAARRRER  60
QQLAVSGSVS SSPATACTAA AAASASASKK PRLLSSQTTT SHTSTSNATT PRSFDTTSSH  120
QGNADDDILD ASFRESLPRH VRAPAVFKCV RVTSIADGED EYAYQAMVTI NGHVFKGFLY  180
DQGVDDGRLA ATSNDDSTAG VPNISELHLG GASVSSLGGN AVKEGGSSMV PSDLYGVSGG  240
GGPHILGGSS YGNTMN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126097e-99CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971303.11e-112PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_015622050.11e-112PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_015691020.11e-113PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
SwissprotQ94CK92e-64LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0D3EYS81e-112A0A0D3EYS8_9ORYZ; Uncharacterized protein
TrEMBLI1NVC01e-112I1NVC0_ORYGL; Uncharacterized protein
STRINGORGLA01G0381000.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-54Lateral root primordium (LRP) protein-related